New in version 2.1.0.
At import time,
mpi4py initializes the MPI execution environment calling
MPI_Init_thread() and installs an exit hook to automatically call
MPI_Finalize() just before the Python process terminates. Additionally,
mpi4py overrides the default
MPI.ERRORS_ARE_FATAL error handler
in favor of
MPI.ERRORS_RETURN, which allows translating MPI errors in
Python exceptions. These departures from standard MPI behavior may be
controversial, but are quite convenient within the highly dynamic Python
programming environment. Third-party code using
mpi4py can just
mpi4py import MPI and perform MPI calls without the tedious
initialization/finalization handling. MPI errors, once translated
automatically to Python exceptions, can be dealt with the common
finally clauses; unhandled
MPI exceptions will print a traceback which helps in locating problems in
Unfortunately, the interplay of automatic MPI finalization and unhandled exceptions may lead to deadlocks. In unattended runs, these deadlocks will drain the battery of your laptop, or burn precious allocation hours in your supercomputing facility.
Consider the following snippet of Python code. Assume this code is stored in a standard Python script file and run with mpiexec in two or more processes.
from mpi4py import MPI assert MPI.COMM_WORLD.Get_size() > 1 rank = MPI.COMM_WORLD.Get_rank() if rank == 0: 1/0 MPI.COMM_WORLD.send(None, dest=1, tag=42) elif rank == 1: MPI.COMM_WORLD.recv(source=0, tag=42)
Process 0 raises
ZeroDivisionError exception before performing a send
call to process 1. As the exception is not handled, the Python interpreter
running in process 0 will proceed to exit with non-zero status. However, as
mpi4py installed a finalizer hook to call
exit, process 0 will block waiting for other processes to also enter the
MPI_Finalize() call. Meanwhile, process 1 will block waiting for a
message to arrive from process 0, thus never reaching to
MPI_Finalize(). The whole MPI execution environment is irremediably in
a deadlock state.
To alleviate this issue,
mpi4py offers a simple, alternative command
line execution mechanism based on using the -m
flag and implemented with the
runpy module. To use this features, Python
code should be run passing
-m mpi4py in the command line invoking the
Python interpreter. In case of unhandled exceptions, the finalizer hook will
MPI_Abort() on the
MPI_COMM_WORLD communicator, thus
effectively aborting the MPI execution environment.
When a process is forced to abort, resources (e.g. open files) are not
cleaned-up and any registered finalizers (either with the
module, the Python C/API function
Py_AtExit(), or even the C
standard library function
atexit()) will not be executed. Thus,
aborting execution is an extremely impolite way of ensuring process
termination. However, MPI provides no other mechanism to recover from a
The use of
-m mpi4py to execute Python code on the command line resembles
that of the Python interpreter.
mpiexec -n numprocs python -m mpi4py pyfile [arg] ...
mpiexec -n numprocs python -m mpi4py -m mod [arg] ...
mpiexec -n numprocs python -m mpi4py -c cmd [arg] ...
mpiexec -n numprocs python -m mpi4py - [arg] ...
Execute the Python code contained in pyfile, which must be a filesystem path referring to either a Python file, a directory containing a
__main__.pyfile, or a zipfile containing a
Execute the Python code in the cmd string command.
Read commands from standard input (
- Command line
- Documentation on Python command line interface.